Metadata-Version: 2.1
Name: capcruncher
Version: 0.1.1a1
Summary: An end-to-end solution for processing Capture-C Tri-C and Tiled-C data
Home-page: https://github.com/sims-lab/CapCruncher.git
Author: asmith
Author-email: alastair.smith@ndcls.ox.ac.uk
License: GNU GENERAL PUBLIC LICENSE Version 3
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: Operating System :: POSIX :: Linux
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: Implementation :: CPython
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: pandas (>=1)
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Provides-Extra: plotting
Requires-Dist: coolbox ; extra == 'plotting'
Provides-Extra: stats
Requires-Dist: diffxpy ; extra == 'stats'

# CapCruncher

[![Documentation Status](https://readthedocs.org/projects/capcruncher/badge/?version=latest)](https://capcruncher.readthedocs.io/en/latest/?badge=latest)
[![codecov](https://codecov.io/gh/sims-lab/CapCruncher/branch/master/graph/badge.svg?token=RHIGNMGX09)](https://codecov.io/gh/sims-lab/CapCruncher)
![CI](https://github.com/sims-lab/capture-c/actions/workflows/python-template.yml/badge.svg)
[![Anaconda-Server Badge](https://anaconda.org/bioconda/capcruncher/badges/installer/conda.svg)](https://conda.anaconda.org/bioconda)
[![DOI](https://zenodo.org/badge/224631087.svg)](https://zenodo.org/badge/latestdoi/224631087)



## Analysis software for Capture-C, Tri-C and Tiled-C data.

CapCruncher is a tool designed to automate the processing of Capture-C, Tri-C and Tiled-C data from FASTQ files. The package is entirely written in python and  consists of an end-to-end data processing pipline and supporting command line interface to enable finer grained control. The pipeline provided is fast, robust and  scales from a laptop to a computational cluster. 

For further information see the [documentation](https://capcruncher.readthedocs.io/en/latest/)


