click>=8.0.0
biopython>=1.79
numpy>=1.21.0
pyyaml>=6.0
pysam>=0.19.0
matplotlib>=3.7
duckdb>=0.9

[dev]
pytest>=7.0.0
pytest-cov>=3.0.0
black>=22.0.0
mypy>=0.900
ruff>=0.0.270

[docs]
sphinx>=4.0.0
sphinx-rtd-theme>=1.0.0
