.gitignore
LICENSE
MANIFEST.in
Makefile
README.md
README.rst
requirements_dev.txt
setup.cfg
setup.py
carveme/__init__.py
carveme/config.cfg
carveme.egg-info/PKG-INFO
carveme.egg-info/SOURCES.txt
carveme.egg-info/dependency_links.txt
carveme.egg-info/not-zip-safe
carveme.egg-info/requires.txt
carveme.egg-info/top_level.txt
carveme/data/generated/bigg_gibbs.csv
carveme/data/input/bigg_models.csv
carveme/data/input/biomass_db.tsv
carveme/data/input/manually_curated.csv
carveme/data/input/media_db.tsv
carveme/data/input/metabolomics_park2016.csv
carveme/data/input/unbalanced_metabolites.csv
carveme/reconstruction/__init__.py
carveme/reconstruction/carving.py
carveme/reconstruction/diamond.py
carveme/reconstruction/eggnog.py
carveme/reconstruction/gapfilling.py
carveme/reconstruction/media.py
carveme/reconstruction/ncbi_download.py
carveme/reconstruction/scoring.py
carveme/reconstruction/utils.py
carveme/universe/__init__.py
carveme/universe/bigg_download.py
carveme/universe/curation.py
carveme/universe/thermodynamics.py
docs/.gitignore
docs/Makefile
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/readme.rst
docs/usage.rst
scripts/build_universe
scripts/carve
scripts/carveme_init
scripts/gapfill
tests/__init__.py
tests/test_carveme.py