Metadata-Version: 2.1
Name: bio2bel-entrez
Version: 0.0.1.dev0
Summary: A package for parsing and storing Entrez Gene
Home-page: https://github.com/cthoyt/pyentrez
Author: Charles Tapley Hoyt
Author-email: charles.hoyt@scai.fraunhofer.de
Maintainer: Charles Tapley Hoyt
Maintainer-email: charles.hoyt@scai.fraunhofer.de
License: Apache 2.0 License
Description: Bio2BEL Entrez |build| |coverage| |documentation|
        =================================================
        This package downloads, parses, and stores the Entrez Gene and HomoloGene databases then provides utilities for
        converting to BEL.
        
        Installation |pypi_version| |python_versions| |pypi_license|
        ------------------------------------------------------------
        ``bio2bel_entrez`` can be installed easily from `PyPI <https://pypi.python.org/pypi/bio2bel_entrez>`_ with
        the following code in your favorite terminal:
        
        .. code-block:: sh
        
            $ python3 -m pip install bio2bel_entrez
        
        or from the latest code on `GitHub <https://github.com/bio2bel/entrez>`_ with:
        
        .. code-block:: sh
        
            $ python3 -m pip install git+https://github.com/bio2bel/entrez.git@master
        
        Setup
        -----
        Entrez can be downloaded and populated from either the Python REPL or the automatically installed command line
        utility.
        
        Python REPL
        ~~~~~~~~~~~
        .. code-block:: python
        
            >>> import bio2bel_entrez
            >>> entrez_manager = bio2bel_entrez.Manager()
            >>> entrez_manager.populate()
        
        Command Line Utility
        ~~~~~~~~~~~~~~~~~~~~
        .. code-block:: bash
        
            bio2bel_entrez populate
        
        Citations
        ---------
        - Maglott, D., *et al.* (2011). `Entrez Gene: gene-centered information at NCBI <http://doi.org/10.1093/nar/gkq1237>`_. Nucleic Acids Research, 39(Database issue), D52–D57.
        
        .. |build| image:: https://travis-ci.org/bio2bel/entrez.svg?branch=master
            :target: https://travis-ci.org/bio2bel/entrez
            :alt: Build Status
        
        .. |coverage| image:: https://codecov.io/gh/bio2bel/entrez/coverage.svg?branch=master
            :target: https://codecov.io/gh/bio2bel/entrez?branch=master
            :alt: Coverage Status
        
        .. |documentation| image:: http://readthedocs.org/projects/bio2bel-entrez/badge/?version=latest
            :target: http://bio2bel.readthedocs.io/projects/entrez/en/latest/?badge=latest
            :alt: Documentation Status
        
        .. |climate| image:: https://codeclimate.com/github/bio2bel/entrez/badges/gpa.svg
            :target: https://codeclimate.com/github/bio2bel/entrez
            :alt: Code Climate
        
        .. |python_versions| image:: https://img.shields.io/pypi/pyversions/bio2bel_entrez.svg
            :alt: Stable Supported Python Versions
        
        .. |pypi_version| image:: https://img.shields.io/pypi/v/bio2bel_entrez.svg
            :alt: Current version on PyPI
        
        .. |pypi_license| image:: https://img.shields.io/pypi/l/bio2bel_entrez.svg
            :alt: MIT License
        
Platform: UNKNOWN
Provides-Extra: web
