README.rst
setup.py
bdgenomics/__init__.py
bdgenomics.workflows.egg-info/PKG-INFO
bdgenomics.workflows.egg-info/SOURCES.txt
bdgenomics.workflows.egg-info/dependency_links.txt
bdgenomics.workflows.egg-info/entry_points.txt
bdgenomics.workflows.egg-info/requires.txt
bdgenomics.workflows.egg-info/top_level.txt
bdgenomics/workflows/__init__.py
bdgenomics/workflows/spark.py
bdgenomics/workflows/version.py
bdgenomics/workflows/adam_pipeline/__init__.py
bdgenomics/workflows/adam_pipeline/preprocessing.py
bdgenomics/workflows/avocado_pipeline/__init__.py
bdgenomics/workflows/avocado_pipeline/variant_calling.py
bdgenomics/workflows/benchmarking/__init__.py
bdgenomics/workflows/benchmarking/gatk3_pipeline/__init__.py
bdgenomics/workflows/benchmarking/gatk3_pipeline/preprocessing.py
bdgenomics/workflows/benchmarking/single_node/__init__.py
bdgenomics/workflows/benchmarking/single_node/bqsr.py
bdgenomics/workflows/benchmarking/single_node/mkdups.py
bdgenomics/workflows/benchmarking/single_node/realign_indels.py
bdgenomics/workflows/benchmarking/single_node/sort.py
bdgenomics/workflows/cannoli_pipeline/__init__.py
bdgenomics/workflows/cannoli_pipeline/bwa_alignment.py
bdgenomics/workflows/deca_pipeline/__init__.py
bdgenomics/workflows/deca_pipeline/call_cnvs.py
bdgenomics/workflows/test/__init__.py
bdgenomics/workflows/test/test_spark.py
bdgenomics/workflows/tools/__init__.py
bdgenomics/workflows/tools/aligners.py
bdgenomics/workflows/tools/indexing.py
bdgenomics/workflows/tools/preprocessing.py
bdgenomics/workflows/tools/spark_tools.py