LICENSE.txt
MANIFEST.in
README.md
setup.cfg
setup.py
SELDOMpy/__init__.py
SELDOMpy.egg-info/PKG-INFO
SELDOMpy.egg-info/SOURCES.txt
SELDOMpy.egg-info/dependency_links.txt
SELDOMpy.egg-info/requires.txt
SELDOMpy.egg-info/top_level.txt
SELDOMpy/src/AMIGO_model.c
SELDOMpy/src/AMIGO_model_stats.c
SELDOMpy/src/AMIGO_problem.c
SELDOMpy/src/anODEModel.c
SELDOMpy/src/cvodea.c
SELDOMpy/src/cvodea_io.c
SELDOMpy/src/cvodes.c
SELDOMpy/src/cvodes_band.c
SELDOMpy/src/cvodes_bandpre.c
SELDOMpy/src/cvodes_bbdpre.c
SELDOMpy/src/cvodes_dense.c
SELDOMpy/src/cvodes_diag.c
SELDOMpy/src/cvodes_direct.c
SELDOMpy/src/cvodes_io.c
SELDOMpy/src/cvodes_spbcgs.c
SELDOMpy/src/cvodes_spgmr.c
SELDOMpy/src/cvodes_spils.c
SELDOMpy/src/cvodes_sptfqmr.c
SELDOMpy/src/decimal2binary.c
SELDOMpy/src/dhc.c
SELDOMpy/src/findStates.c
SELDOMpy/src/fnvector_serial.c
SELDOMpy/src/getAdjacencyMatrix.c
SELDOMpy/src/getNumBits.c
SELDOMpy/src/getNumInputs.c
SELDOMpy/src/getStateIndex.c
SELDOMpy/src/getTruthTables.c
SELDOMpy/src/get_count_bits.c
SELDOMpy/src/get_input_index.c
SELDOMpy/src/get_support_truth_tables.c
SELDOMpy/src/get_truth_tables_index.c
SELDOMpy/src/hill_function.c
SELDOMpy/src/linear_transfer_function.c
SELDOMpy/src/normHill.c
SELDOMpy/src/nvector_serial.c
SELDOMpy/src/printAdjMat.c
SELDOMpy/src/printInterMat.c
SELDOMpy/src/printNminiTerms.c
SELDOMpy/src/printTruthTables.c
SELDOMpy/src/sim_logic_ode.c
SELDOMpy/src/simulate_amigo_model.c
SELDOMpy/src/sundials_band.c
SELDOMpy/src/sundials_dense.c
SELDOMpy/src/sundials_direct.c
SELDOMpy/src/sundials_iterative.c
SELDOMpy/src/sundials_math.c
SELDOMpy/src/sundials_nvector.c
SELDOMpy/src/sundials_spbcgs.c
SELDOMpy/src/sundials_spgmr.c
SELDOMpy/src/sundials_sptfqmr.c
SELDOMpy/examples/MAPK/MAPK.xlsx
SELDOMpy/examples/MAPK/MAPK_training_and_reduce.py
SELDOMpy/examples/MAPK/MAPK_training_and_reduce_pyPESTO.py
SELDOMpy/examples/SP/SP.xlsx
SELDOMpy/examples/SP/SP_training_and_reduce.py
SELDOMpy/examples/SP/SP_training_and_reduce_pyPESTO.py
SELDOMpy/functions/buildmim.py
SELDOMpy/functions/extras.py
SELDOMpy/functions/gen_exps.py
SELDOMpy/functions/getLBODEmodel.py
SELDOMpy/functions/getRandomLBODEmodel.py
SELDOMpy/functions/optimization.py
SELDOMpy/functions/plot_results.py
SELDOMpy/functions/reduce_fun.py
SELDOMpy/functions/simulate_logic_based_ode.py
SELDOMpy/functions/simulate_logic_based_ode_obs.py
SELDOMpy/src/AMIGO_model.c
SELDOMpy/src/AMIGO_model_stats.c
SELDOMpy/src/AMIGO_problem.c
SELDOMpy/src/CNOStructure.h
SELDOMpy/src/__init__.py
SELDOMpy/src/anODEModel.c
SELDOMpy/src/cvodea.c
SELDOMpy/src/cvodea_io.c
SELDOMpy/src/cvodes.c
SELDOMpy/src/cvodes_band.c
SELDOMpy/src/cvodes_bandpre.c
SELDOMpy/src/cvodes_bandpre_impl.h
SELDOMpy/src/cvodes_bbdpre.c
SELDOMpy/src/cvodes_bbdpre_impl.h
SELDOMpy/src/cvodes_dense.c
SELDOMpy/src/cvodes_diag.c
SELDOMpy/src/cvodes_diag_impl.h
SELDOMpy/src/cvodes_direct.c
SELDOMpy/src/cvodes_direct_impl.h
SELDOMpy/src/cvodes_impl.h
SELDOMpy/src/cvodes_io.c
SELDOMpy/src/cvodes_spbcgs.c
SELDOMpy/src/cvodes_spgmr.c
SELDOMpy/src/cvodes_spils.c
SELDOMpy/src/cvodes_spils_impl.h
SELDOMpy/src/cvodes_sptfqmr.c
SELDOMpy/src/decimal2binary.c
SELDOMpy/src/dhc.c
SELDOMpy/src/findStates.c
SELDOMpy/src/fnvector_serial.c
SELDOMpy/src/fnvector_serial.h
SELDOMpy/src/getAdjacencyMatrix.c
SELDOMpy/src/getNumBits.c
SELDOMpy/src/getNumInputs.c
SELDOMpy/src/getStateIndex.c
SELDOMpy/src/getTruthTables.c
SELDOMpy/src/get_count_bits.c
SELDOMpy/src/get_input_index.c
SELDOMpy/src/get_support_truth_tables.c
SELDOMpy/src/get_truth_tables_index.c
SELDOMpy/src/hill_function.c
SELDOMpy/src/linear_transfer_function.c
SELDOMpy/src/normHill.c
SELDOMpy/src/nvector_serial.c
SELDOMpy/src/printAdjMat.c
SELDOMpy/src/printInterMat.c
SELDOMpy/src/printNminiTerms.c
SELDOMpy/src/printTruthTables.c
SELDOMpy/src/sim_logic_ode.c
SELDOMpy/src/simulate_amigo_model.c
SELDOMpy/src/sundials_band.c
SELDOMpy/src/sundials_dense.c
SELDOMpy/src/sundials_direct.c
SELDOMpy/src/sundials_iterative.c
SELDOMpy/src/sundials_math.c
SELDOMpy/src/sundials_nvector.c
SELDOMpy/src/sundials_spbcgs.c
SELDOMpy/src/sundials_spgmr.c
SELDOMpy/src/sundials_sptfqmr.c
SELDOMpy/src/include/include_amigo/AMIGO_hdf5.h
SELDOMpy/src/include/include_amigo/AMIGO_model.h
SELDOMpy/src/include/include_amigo/AMIGO_model_stats.h
SELDOMpy/src/include/include_amigo/AMIGO_problem.h
SELDOMpy/src/include/include_amigo/amigoJAC.h
SELDOMpy/src/include/include_amigo/amigoRHS.h
SELDOMpy/src/include/include_amigo/amigoSensRHS.h
SELDOMpy/src/include/include_amigo/simulate_amigo_model.h
SELDOMpy/src/include/include_cvodes/cvodes/cvodes.h
SELDOMpy/src/include/include_cvodes/cvodes/cvodes_band.h
SELDOMpy/src/include/include_cvodes/cvodes/cvodes_bandpre.h
SELDOMpy/src/include/include_cvodes/cvodes/cvodes_bbdpre.h
SELDOMpy/src/include/include_cvodes/cvodes/cvodes_dense.h
SELDOMpy/src/include/include_cvodes/cvodes/cvodes_diag.h
SELDOMpy/src/include/include_cvodes/cvodes/cvodes_direct.h
SELDOMpy/src/include/include_cvodes/cvodes/cvodes_lapack.h
SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spbcgs.h
SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spgmr.h
SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spils.h
SELDOMpy/src/include/include_cvodes/cvodes/cvodes_sptfqmr.h
SELDOMpy/src/include/include_cvodes/nvector/nvector_serial.h
SELDOMpy/src/include/include_cvodes/sundials/sundials_band.h
SELDOMpy/src/include/include_cvodes/sundials/sundials_config.h
SELDOMpy/src/include/include_cvodes/sundials/sundials_dense.h
SELDOMpy/src/include/include_cvodes/sundials/sundials_direct.h
SELDOMpy/src/include/include_cvodes/sundials/sundials_fnvector.h
SELDOMpy/src/include/include_cvodes/sundials/sundials_iterative.h
SELDOMpy/src/include/include_cvodes/sundials/sundials_lapack.h
SELDOMpy/src/include/include_cvodes/sundials/sundials_math.h
SELDOMpy/src/include/include_cvodes/sundials/sundials_nvector.h
SELDOMpy/src/include/include_cvodes/sundials/sundials_spbcgs.h
SELDOMpy/src/include/include_cvodes/sundials/sundials_spgmr.h
SELDOMpy/src/include/include_cvodes/sundials/sundials_sptfqmr.h
SELDOMpy/src/include/include_cvodes/sundials/sundials_types.h