find-clumpiness-0.2.3.1: Find the clumpiness of labels in a tree

Safe HaskellNone
LanguageHaskell2010

Types

Synopsis

Documentation

data NodeLabel #

Constructors

NodeLabel 

Fields

Instances
Eq NodeLabel # 
Instance details

Defined in Types

Methods

(==) :: NodeLabel -> NodeLabel -> Bool #

(/=) :: NodeLabel -> NodeLabel -> Bool #

Ord NodeLabel # 
Instance details

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Methods

compare :: NodeLabel -> NodeLabel -> Ordering #

(<) :: NodeLabel -> NodeLabel -> Bool #

(<=) :: NodeLabel -> NodeLabel -> Bool #

(>) :: NodeLabel -> NodeLabel -> Bool #

(>=) :: NodeLabel -> NodeLabel -> Bool #

max :: NodeLabel -> NodeLabel -> NodeLabel #

min :: NodeLabel -> NodeLabel -> NodeLabel #

Read NodeLabel # 
Instance details

Defined in Types

Methods

readsPrec :: Int -> ReadS NodeLabel #

readList :: ReadS [NodeLabel] #

readPrec :: ReadPrec NodeLabel #

readListPrec :: ReadPrec [NodeLabel] #

Show NodeLabel # 
Instance details

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Methods

showsPrec :: Int -> NodeLabel -> ShowS #

show :: NodeLabel -> String #

showList :: [NodeLabel] -> ShowS #

Generic NodeLabel # 
Instance details

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Associated Types

type Rep NodeLabel :: * -> * #

Methods

from :: NodeLabel -> Rep NodeLabel x #

to :: Rep NodeLabel x -> NodeLabel #

FromJSON NodeLabel # 
Instance details

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Methods

parseJSON :: Value -> Parser NodeLabel #

parseJSONList :: Value -> Parser [NodeLabel] #

WorkableTree (Tree NodeLabel) # 
Instance details

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Methods

makeWorkable :: Tree NodeLabel -> Tree NodeLabel #

type Rep NodeLabel # 
Instance details

Defined in Types

type Rep NodeLabel = D1 (MetaData "NodeLabel" "Types" "find-clumpiness-0.2.3.1-BRgTdYPfHJpKCSNVE15XFJ" False) (C1 (MetaCons "NodeLabel" PrefixI True) (S1 (MetaSel (Just "nodeID") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 Text) :*: S1 (MetaSel (Just "nodeLabels") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 Labels)))

data Format #

Constructors

JSON 
RJSON 
Haskell HaskellFormat 
Newick 
Lineage Text 
Instances
Read Format # 
Instance details

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Methods

readsPrec :: Int -> ReadS Format #

readList :: ReadS [Format] #

readPrec :: ReadPrec Format #

readListPrec :: ReadPrec [Format] #

data HaskellFormat #

Constructors

BaseFormat 
TreeFormat 
DendrogramFormat 
Instances
Read HaskellFormat # 
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Methods

readsPrec :: Int -> ReadS HaskellFormat #

readList :: ReadS [HaskellFormat] #

readPrec :: ReadPrec HaskellFormat #

readListPrec :: ReadPrec [HaskellFormat] #

data Exclusivity #

Constructors

Exclusive 
AllExclusive 
Majority 
Instances
Read Exclusivity # 
Instance details

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Methods

readsPrec :: Int -> ReadS Exclusivity #

readList :: ReadS [Exclusivity] #

readPrec :: ReadPrec Exclusivity #

readListPrec :: ReadPrec [Exclusivity] #

newtype Separator #

Constructors

Separator Text 
Instances
Show Separator # 
Instance details

Defined in Types

Methods

showsPrec :: Int -> Separator -> ShowS #

show :: Separator -> String #

showList :: [Separator] -> ShowS #

newtype Field #

Constructors

Field Int 
Instances
Show Field # 
Instance details

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Methods

showsPrec :: Int -> Field -> ShowS #

show :: Field -> String #

showList :: [Field] -> ShowS #

type Label = Text #

type Labels = Seq Label #

class WorkableTree a where #

Class of trees that can be converted to workable trees.

Minimal complete definition

makeWorkable

Methods

makeWorkable :: a -> Tree NodeLabel #

Instances
WorkableTree (Tree (Seq Text)) # 
Instance details

Defined in Types

Methods

makeWorkable :: Tree (Seq Text) -> Tree NodeLabel #

WorkableTree (Tree NodeLabel) # 
Instance details

Defined in Types

Methods

makeWorkable :: Tree NodeLabel -> Tree NodeLabel #

WorkableTree (Dendrogram (Seq Text)) # 
Instance details

Defined in Types

Methods

makeWorkable :: Dendrogram (Seq Text) -> Tree NodeLabel #