| Safe Haskell | Safe |
|---|---|
| Language | Haskell98 |
Bio.RNAzData
Description
This module contains a hierarchical data structure for RNAz output For more information on RNAz consult: http://www.tbi.univie.ac.at/~wash/RNAz/
Synopsis
- data RNAz = RNAz {
- version :: String
- sequenceNumber :: Int
- columnNumber :: Int
- readingDirection :: String
- meanPairwiseIdentity :: Double
- shannonEntropy :: Double
- gcContent :: Double
- meanSingleSequenceMinimumFreeEnergy :: Double
- consensusMinimumFreeEnergy :: Double
- energyContribution :: Double
- covarianceContribution :: Double
- combinationsPair :: Double
- meanZScore :: Double
- structureConservationIndex :: Double
- backgroundModel :: String
- decisionModel :: String
- svmDecisionValue :: Double
- svmRNAClassProbability :: Double
- prediction :: String
- rnazResults :: [RNAzResult]
- rnazConsensus :: RNAzConsensus
- data RNAzResult = RNAzResult {}
- data RNAzConsensus = RNAzConsensus {}
Documentation
All elements of RNAz output are contained in this datatype
Constructors
data RNAzResult #
Datatype contains all result elements for each member of the input alignment
Constructors
| RNAzResult | |
Fields
| |
Instances
| Eq RNAzResult # | |
Defined in Bio.RNAzData | |
| Show RNAzResult # | |
Defined in Bio.RNAzData Methods showsPrec :: Int -> RNAzResult -> ShowS # show :: RNAzResult -> String # showList :: [RNAzResult] -> ShowS # | |
data RNAzConsensus #
Datatype contains all elements for the consenus result of input alignment
Constructors
| RNAzConsensus | |
Fields | |
Instances
| Eq RNAzConsensus # | |
Defined in Bio.RNAzData Methods (==) :: RNAzConsensus -> RNAzConsensus -> Bool # (/=) :: RNAzConsensus -> RNAzConsensus -> Bool # | |
| Show RNAzConsensus # | |
Defined in Bio.RNAzData Methods showsPrec :: Int -> RNAzConsensus -> ShowS # show :: RNAzConsensus -> String # showList :: [RNAzConsensus] -> ShowS # | |